WGCNA
WGCNA 1.69
Quick StartTo use WGCNA 1.69, import your data in csv format
- Resources: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/index.html
- https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> WGCNA
Input File(s)
Use the following files from the directory above as test input.
- GeneAnnotation.csv
- ClinicalTraits.csv
- LiverFemale3600.csv
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- There are no other parameters.
Follow one of the the 'R tutorial' available here.
Output File(s)
If you follow the tutorial link above (link in 'parameters' section) you should get the outputs shown in the 'output' folder in the 'test data' folder above.