2013 10 28 TSW Colorado State
Organizers | Jason Williams, Jan Leach |
|---|---|
Trainers | Jason W., Sriram S., John F. |
Date | Monday and Tuesday, Oct 28 - 29, 2013 |
Location | Lory Student Center Rm. 228 |
Designated Lodging | Hilton Fort Collins |
Please Remember to Bring
Wi-Fi enabled laptop and power supply:
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
Workshop Handout
Workshop Program
Workshop Program (Monday, October 28th)
Time | Description | Slides | Links | Presenter |
09:00 AM | Arrive / Sign-in / Verify iPlant Accounts |
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09:30 AM | Welcome - Presenter/Participant Self-Introductions |
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09:45 AM | Overview of the iPlant Collaborative |
| Jason | |
10:00 AM | Overview of the iPlant Discovery Environment (DE) | Sriram | ||
10:45 AM | Coffee Break |
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11:00 AM | iPlant Data Store - Managing "Big Data" | | John | |
11:45 AM | Workflows in the DE; Phylogenetics Example | | Sriram | |
12:15 PM | Lunch |
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12:45 PM | Using the DE for RNA-Seq | Jason | ||
01:15 PM | Atmosphere Cloud Computing | Jason | ||
02:00 PM | Tools Integration in the DE | |
| Sriram |
02:45 PM | Workshop summary and conclusion | Jason |
Workshop Program (Tuesday, October 29th)
Time | Description | Slides | Links | Presenter |
|---|---|---|---|---|
09:30 AM | Visualization of RNA-Seq results in Atmosphere | Jason | ||
10:30 AM | Getting started with Annotation: | | Jason | |
10:45 AM | Break |
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11:00 AM | ChIP Seq - Motif detection |
| John | |
12:00 PM | Lunch (On your own) |
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01:00 PM | Advanced CI: iPlant Foundation API |
| John | |
01:45 PM | iCommands and other Data Store applications: |
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02:00 PM | Graduate Student Seminar: |
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| John |
Attendee List (max: 35)
Name | Research Area | Acct Status | |
|---|---|---|---|
Lindsay Triplett | Plant Biol | lindsay.triplett@colostate.edu | X |
Paul Langlois | Molec Biosciences | palang@rams.colostate.edu | X |
Tony Compillo | Plant Biol | t.campillo@hotmai.fr |
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Youchun Li | Plant Biol | youchun.li@anheuser-busch.com |
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Anne Sylvester | Plant Biol | annesyl@uwyo.edu | X |
Stephen Herbert | Plant Biol | sherbert@uwyo.edu | x |
Ava Hoffman | Ecol Studies | amh4ec@virginia.edu | x |
June Medford | Synthetic Biology | june.medford@colostate.edu | x |
Robert Baker | Plant Biol | robert.baker@uwyo.edu | x |
Judy Harrington | Genetics & Nucleic Acides | judy.harrington@colostate.edu | x |
Patrick Byrne | Plant Biol | patrick.byrne@colostate.edu | x |
James Craven | Biochem/Mol Structure & Function | dinmenel@gmail.com | x |
Christopher Van Horn | Mol Biosciences | christopher.van_horn@colostate.edu | x |
Cory Culligan | Mol Biosciences | cory.culligan@yahoo.com | x |
Wahid Awad | Genetics and Nucleic Acids | waheedagain@gmail.com |
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Sarah Grogan | Plant Biol | sarahgrogan@gmail.com |
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Jiameng Wang | Plant Biol | wang94@rams.colostate.edu | x |
Addison Reed | Plant Biol | addison.reed@ars.usda.gov | x |
Andrew Thran | Plant Biol | aethran@rams.colostate.edu | x |
Patrick Reeves | Plant Biol | pat.reeves@ars.usda.gov | x |
Jiayi Sun | Biochem and Mol Structure and Function | jiayisun@eng.colostate.edu |
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Darci Giacomini | Plant Biol | dagiac@rams.colostate.edu | x |
Saiprasad Palusa | Plant Biol | saigoud@lamar.colostate.edu |
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David Xing | Mol Biosciences | denghui.xing@colostate.edu | x |
Kevin Morey | Plant Biol | Kevin.morey@colostate.edu | x |
Lee Panella | Genetics & Nucleic Acids | lee.panella@ars.usda.gov | x |
Faith Robison | Plant Biol | frobison@rams.colostate.edu |