GATC07

Owned by Joshua Stein
Last updated: Jul 19, 2011Version comment
1 min read

Updates:

Transcript contig annotation status:

  • Staged on /work/01770/steinj/rna_assembly/contig_annotation/
  • bx_refseq_pipeline (SGE pipeline for running blastx using refseq database)
  • evaluate_refseq_bx.pl (evaluation script)
  • test data: S. peruvianum RNA-seq assembly and parsed blast data

Need to:

  • Move to lonestar?
  • Get blastall installed
  • perl modules:
  • Edit qsub commands to make work on Teragrid.