Rcross
Rcross
Rcross performs a random cross or reformats a data set. Cross types include F1 backcrosses to the P1 or P2, F2 crosses produced by selfing or random mating, recombinant inbred lines as well as a few others. It simulates marker and trait data.
Quick Start
- To use Rcross, upload your data in the same format of Rmap output. Rcross requires a genetic linkage map that should be in the same format of Rmap outputs.
- Resources: documentation
Test Data
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:
Community Data > iplantcollaborative > example_data > rcross
Input File(s)
- Use qtlcart.qtl as input.
- Use qtlcart.map as input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
- Expect qtlcart.cro as output.
- Expect qtlcart.log and qtlcart.rc as output.