Convert bwt to arf
This app takes a bwt file, the default output format from Bowtie (not Bowtie2), and converts it to arf format for use with miRDeep2.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> miRDeep2
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
There are no parameters to be set in this app. Set the output filename to reads_collasped_vs_genome.arf.
Expect a file named exactly as you name it as output. For the test case, the output file you will find in the example_data directory is named reads_collasped_vs_genome.arf