Final filter2

Final filter2

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Final filter in mutant identification 1 pipeline (Workflow:Mutant Identification 1) using awk to print columns 2, 3, 4 and 1 if line doesn't contain X. Also contains a substitution for removal of %

Quick Start

To use Final filter2, import your data in text file format.
Resources: http://www.gnu.org/software/gawk/manual/gawk.html

Test Data

Test data for this app appears directly here: http://de.iplantcollaborative.org/dl/d/373B1295-8621-4DD8-8B66-65710B7734C8/uniq_output.txt

Input File(s)

Use the file above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect a text file named Final_mutant_specific_homozygotes.txt after the input files as output.