Bowtie2Build-2.2.4 indexer

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Quick Start

To use Bowtie2Build-2.2.4 indexer, import your data in fasta format.
Resources: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#the-bowtie2-build-indexer

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> bowtie2-2.2.4-indexer

Input File(s)

Use lambda_virus.fa from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use lambda as the prefix name.

Output File(s)

Expect a text file named with lambda as the prefix as output. For the test case, the output files you will find in the example_data directory are named lambda.1.bt2 etc.

Tool Source for App

https://github.com/BenLangmead/bowtie