/
Bowtie2Build-2.2.4 indexer
Bowtie2Build-2.2.4 indexer
Bowtie2Build-2.2.4 indexer
Community rating: ?????
Quick Start
- To use Bowtie2Build-2.2.4 indexer, import your data in fasta format.
- Resources: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#the-bowtie2-build-indexer
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> bowtie2-2.2.4-indexer
Input File(s)
Use lambda_virus.fa from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use lambda as the prefix name.
Output File(s)
Expect a text file named with lambda as the prefix as output. For the test case, the output files you will find in the example_data directory are named lambda.1.bt2 etc.
Tool Source for App
, multiple selections available,
Related content
Bowtie2-build 2.2.4 Indexer
Bowtie2-build 2.2.4 Indexer
More like this
Bowtie2-2.2.4 Bowtie2-Build indexer and aligner (HPC)
Bowtie2-2.2.4 Bowtie2-Build indexer and aligner (HPC)
More like this
Bowtie 1.2.2 build and map
Bowtie 1.2.2 build and map
More like this
Bowtie-2.2.1--Build-and-Map
Bowtie-2.2.1--Build-and-Map
More like this
Bowtie-Build
Bowtie-Build
More like this
Index fasta file (Samtools 1.7 faidx)
Index fasta file (Samtools 1.7 faidx)
More like this