BEDTools maskFastaFromBed

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Mask a fasta file based on feature coordinates.

Quick Start

To use BEDTools maskFastaFromBed, import your data in BED format.
Resources: http://code.google.com/p/bedtools/

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use chr8.fa and a.bed from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_maskfasta_output as output.

Tool Source for App

http://code.google.com/p/bedtools/