RSEM-Prepare-Reference 1.2.19

Owned by de-confluence
Last updated: Feb 17, 2016 by Roger Barthelson
1 min read

RSEM-Prepare-Reference-1.2.19

Description and Quick Start

Prepares transcripts from genome files and matching GTF files. 

Test Data:
 Community Data > iplantcollaborative > example_data > RSEM_prepare_reference > input
 Input Files -- 2 files needed. A genome sequence file, and a matching .gtf annotation or assembly file. The test files are genome.fas and annotation.gtf

Parameters Used in App: No special parameters or options. 

Output Files: A series of files is created. The main one of interest is the transcript sequence file. Others list the chromosomes or scaffolds in an assembly, and other intermediate files.
Test output files:     Community Data > iplantcollaborative > example_data > output > RSEM_prepare_reference> Arabidopsis.transcripts.fa

References