BCFtools 1.8 query
BCFtools 1.8 query
Quick StartTo use BCFtools 1.8 query, import your data in VCF format along with the corresponding index files.
- Resources: https://github.com/samtools/bcftools
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> BCFtools_merge.
Input File(s)
Use these files from the directory above as test input.
- SRR946914.vcf.gz
- SRR946914.vcf.gz.csi
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- All parameters can be left as default.
Output File(s)
Expect output.vcf as output. It should contain only the fields specified in the output format field.